Publications
2024
Croci, Eleonora; Hess, Hanspeter; Warmuth, Fabian; Künzler, Marina; Börlin, Sean; Baumgartner, Daniel; Müller, Andreas Marc; Gerber, Kate; Mündermann, Annegret (2024). Fully automatic algorithm for detecting and tracking anatomical shoulder landmarks on fluoroscopy images with artificial intelligence. European radiology, 34(1), pp. 270-278. Springer-Verlag 10.1007/s00330-023-10082-8
2023
Menze, Johanna; Croci, Eleonora; Andersen, Michael Skipper; Hess, Hanspeter; Ferguson, Stephen J.; Müller, Andreas Marc; Mündermann, Annegret; Gerber, Kate (1 August 2023). Towards a Musculoskeletal Shoulder Model Depicting Glenohumeral Translations Considering Bony, Ligamentous and Muscular Stability Constraints. In: XXIX Congress of International/Japanese Society of Biomechanics. Fukuoka, Japan. 30th July - 3rd August 2023.
Oswald, Alexandra; Menze, Johanna; Jacxsens, Matthijs; Rojas, Tomás; Zumstein, Matthias A.; Ferguson, Stephen J.; Gerber, Kate (9 July 2023). Automated Shoulder Morphing to Assess Subject Specific Biomechanics of Rotator Cuff Tear and Osteoarthritis. In: 28th Congress of the European Society of Biomechanics. July 9-12, 2023.
Menze, Johanna; Leuthard, Louis; Wirth, Barbara; Audigé, Laurent; De Pieri, Enrico; Gerber, Kate; Ferguson, Stephen J (2023). The effect of pathological shoulder rhythm on muscle and joint forces after reverse shoulder arthroplasty, a numerical analysis. Clinical biomechanics, 107, p. 106030. Elsevier 10.1016/j.clinbiomech.2023.106030
Fliri, Jon; Menze, Johanna; Zumstein, Matthias A.; Ferguson, Stephen J.; Burger, Jürgen; Gerber, Kate (July 2023). Sensitivity study of the hill muscle model in a musculoskeletal shoulder model. In: 28th Congress of the European Society of Biomechanics. Maastricht, the Netherlands. July 9-12, 2023.
Lerch, Till; Meier, Malin Kristin; Steppacher, Simon Damian; Gerber, Nicolas; Zeng, Guodong; Schmaranzer, Florian (June 2023). Pelvis MRI for cinematic rendering of Pelvis 3D models using fast T1 images and deep learning (Unpublished). In: Swiss Congress of Radiology (SCR), 2023. Davos. June 2023.
Meier, Malin Kristin; Scheuber, Samira; Hanke, Markus Simon; Haefeli, Pascal Cyrill; Ruckli, Adrian Cyrill; Liechti, Emanuel Francis; Gerber, Nicolas; Lerch, Till Dominic; Tannast, Moritz; Siebenrock, Klaus Arno; Steppacher, Simon Damian; Schmaranzer, Florian (2023). Does the dGEMRIC Index Recover 3 Years After Surgical FAI Correction and an Initial dGEMRIC Decrease at 1-Year Follow-up? A Controlled Prospective Study. The American journal of sports medicine, 51(7), pp. 1808-1817. Sage 10.1177/03635465231167854
Ruckli, Adrian C.; Nanavati, Andreas K.; Meier, Malin K.; Lerch, Till D.; Steppacher, Simon D.; Vuilleumier, Sébastian; Boschung, Adam; Vuillemin, Nicolas; Tannast, Moritz; Siebenrock, Klaus A.; Gerber, Nicolas; Schmaranzer, Florian (2023). A Deep Learning Method for Quantification of Femoral Head Necrosis Based on Routine Hip MRI for Improved Surgical Decision Making. Journal of personalized medicine, 13(1), p. 153. MDPI 10.3390/jpm13010153
Hess, Hanspeter; Ruckli, Adrian C.; Bürki, Finn; Gerber, Nicolas; Menzemer, Jennifer; Burger, Jürgen; Schär, Michael; Zumstein, Matthias A.; Gerber, Kate (2023). Deep-Learning-Based Segmentation of the Shoulder from MRI with Inference Accuracy Prediction. Diagnostics, 13(10), p. 1668. MDPI 10.3390/diagnostics13101668
2022
Hess, Hanspeter; Gussarow, Philipp; Rojas, J Tomás; Weber, Stefan; Hayoz, Annabel; Zumstein, Matthias A.; Gerber, Kate (13 December 2022). Fully Automatic Analysis of Posterosuperior Full-Thickness Rotator Cuff Tears from MRI. In: Proceedings of The 20th Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery. 10.29007/fnjd
Ruckli, Adrian Cyrill; Schmaranzer, Florian; Meier, Malin K; Lerch, Till D; Steppacher, Simon D; Tannast, Moritz; Zeng, Guodong; Burger, Jürgen; Siebenrock, Klaus A; Gerber, Nicolas; Gerber, Kate (2022). Automated quantification of cartilage quality for hip treatment decision support. International journal of computer assisted radiology and surgery, 17(11), pp. 2011-2021. Springer 10.1007/s11548-022-02714-z
Hess, Hanspeter; Herren, Michael; Gerber, Nicolas; Scheidegger, Olivier; Schär, Michael; Daneshvar, Keivan; Zumstein, Matthias A.; Gerber, Kate (11 June 2022). Automatic quantification of fatty infiltration of the supraspinatus from MRI. In: CAOS 2022: The 21st Annual Meeting of the International Society for Computer Assisted Orthopaedic Surgery. 10.29007/xq8m
2021
Menze, Johanna; Hess, Hanspeter; Ferguson, Stephen J.; Zumstein, Matthias; Gerber, Nicolas; Burger, Jürgen; Gerber, Kate (July 2021). How does the glenoid size affect rotator cuff loading? A musculoskeletal analysis. In: 26th Congress of the European Society of Biomechanics (ESBiomech 2021). Milan, Italy.
Menze, Johanna Franziska; Hess, Hanspeter; Ferguson, Stephen J.; Zumstein, Matthias; Gerber, Nicolas; Burger, Jürgen; Gerber, Kate (July 2021). A Musculoskeletal Parameter Study of Scapula Characteristics Affecting Rotator Cuff Muscle Forces (In Press). In: XXVIII congress of the international society of biomechanics (ISB 2021). Stockholm.
Menze, Johanna Franziska; Rojas, Tomás; Ferguson, Stephen J.; Zumstein, Matthias; DePieri, Enrico; Gerber, Kate (July 2021). Tendon transfers reestablish shoulder rotations after rotator cuff lesions (In Press). In: 18t International Symposium on Computer Simulation in Biomechanics (ISB TGCS 2021). Virtual.
Hess, Hanspeter; Zumstein, M.; Dommer, L.; Schär, M.; Hayoz, A.; Zeng, Guodong; Ruckli, Adrian Cyrill; Burger, Jürgen; Gerber, Nicolas; Gerber, Kate (4 June 2021). Automatic shoulder bone segmentation from CT arthrograms based on deep learning. International Journal of Computer Assisted Radiology and Surgery, 16(S1), pp. 90-91. Springer
Ruckli, Adrian Cyrill; Schmaranzer, F.; Lerch, T.; Boschung, A.; Steppacher, S.; Burger, Jürgen; Tannast, M.; Siebenrock, K.; Gerber, Nicolas; Gerber, Kate (4 June 2021). Deep learning for automatic quantification of AVN of the femoral head on 3D MRI in patients eligible for joint preserving surgery: A pilot study. International Journal of Computer Assisted Radiology and Surgery, 16(S1), S85-S86. Springer-Verlag
Meier, Malin Kristin; Zeng, Guodong; Boschung, Adam; Lerch, Till; Burger, Jürgen; Gerber, Nicolas; Gerber, Kate; Siebenrock, Klaus-Arno; Tannast, Moritz; Steppacher, Simon Damian; Schmaranzer, Florian (June 2021). Deep Learning Based Fully Automated 3D MRI Models Of Hip Cartilage And Labrum: A Pilot Study. In: EFORT Congress (Virtual).
Lerch, Till D.; Zwingelstein, Sébastien; Schmaranzer, Florian; Boschung, Adam; Hanke, Markus S.; Todorski, Inga A. S.; Steppacher, Simon D.; Gerber, Nicolas; Zeng, Guodong; Siebenrock, Klaus A.; Tannast, Moritz (2021). Posterior Extra-articular Ischiofemoral Impingement Can Be Caused by the Lesser and Greater Trochanter in Patients With Increased Femoral Version: Dynamic 3D CT–Based Hip Impingement Simulation of a Modified FABER Test. Orthopaedic journal of sports medicine, 9(5), p. 2325967121990629. Sage Publications 10.1177/2325967121990629
Ruckli, Adrian Cyrill; Schmaranzer, Florian; Lerch, Till; Boschung, Adam; Steppacher, Simon; Burger, Jürgen; Tannast, Moritz; Siebenrock, Klaus; Gerber, Kate; Gerber, Nicolas (17 May 2021). Deep learning for fully-automatic quantification of avascular necrosis of the femoral head on 3D hip MRI in young patients eligible for joint preserving hip surgery: A pilot study (Unpublished). In: Bern Data Science Day 2021. Bern. 23.04.2021. 10.5281/zenodo.4767398
Zeng, Guodong; Schmaranzer, Florian; Lerch, Till D.; Boschung, Adam; Zheng, Guoyan; Burger, Jürgen; Gerber, Kate; Tannast, Moritz; Siebenrock, K.; Kim, Young-Jo; Novais, Eduardo; Gerber, Nicolas (23 April 2021). Entropy Guided Unsupervised Domain Adaptation for Cross-Center Hip Cartilage Segmentation from MRI (Unpublished). In: Bern Data Science Day 2021. 23.04.2021. 10.5281/zenodo.4767469
Ruckli, Adrian Cyrill; Lerch, Till; Boschung, Adam; Steppacher, Simon; Gerber, Nicolas; Gerber, Kate; Burger, Jürgen; Tannast, Moritz; Siebenrock, Klaus; Schmaranzer, Florian (April 2021). Deep learning for fully-automatic quantification of avascular necrosis of the femoral head on 3D hip MRI in young patients eligible for joint preserving hip surgery: A pilot study. Skeletal radiology, 50, p. 1060. Springer
Zeng, Guodong; Schmaranzer, Florian; Degonda, Celia; Gerber, Nicolas; Gerber, Kate; Tannast, Moritz; Burger, Jürgen; Siebenrock, Klaus A.; Zheng, Guoyan; Lerch, Till (2021). MRI-based 3D models of the hip joint enables radiation-free computer-assisted planning of periacetabular osteotomy for treatment of hip dysplasia using deep learning for automatic segmentation. European journal of radiology open, 8, p. 100303. Elsevier 10.1016/j.ejro.2020.100303
Ruckli, Adrian Cyrill; Vuilleumier, S; Boschung, A; Lerch, Till; Steppacher, Simon Damian; Tannast, Moritz; Siebenrock, Klaus-Arno; Burger, Jürgen; Gerber, Nicolas; Schmaranzer, Florian (2021). Deep learning for fully-automatic quantification of avascular necrosis of the femoral head on 3D hip MRI in young patients eligible for joint preserving hip surgery: A pilot study (Unpublished). In: SCR (Swiss Congress of Radiology).
Zeng, Guodong; Degonda, Celia; Boschung, Adam; Schmaranzer, Florian; Gerber, Nicolas; Siebenrock, Klaus-A.; Steppacher, Simon D.; Tannast, Moritz; Lerch, Till (2021). Three-Dimensional Magnetic Resonance Imaging Bone Models of the Hip Joint Using Deep Learning: Dynamic Simulation of Hip Impingement for Diagnosis of Intra- and Extra-articular Hip Impingement. Orthopaedic journal of sports medicine, 9(12), pp. 1-11. Sage Publications 10.1177/23259671211046916
2020
Lerch, T; Zeng, Guodong; Schmaranzer, F; Boschung, A; Gerber, Nicolas; Siebenrock, K-A; Tannast, M (November 2020). Fast Automatic Bone Segmentation Using Machine Learning for MRI Based Dynamic 3d Hip Impingement Simulation Based on t1 VIBE DIXON of the Pelvis in Routine MRI (Unpublished). In: RSNA Annual Meeting (Radiological Society of North America).
Lerch, Till; Schmaranzer, Florian; Boschung, Adam; Zeng, Guodong; Gerber, Nicolas; Siebenrock, Klaus-Arno; Tannast, Moritz (November 2020). Valgus and Increased Acetabular Version Can Aggravate Posterior Extraarticular Ischiofemoral Femoroacetabular Impingement in Patients With Increased Femoral Version in Dynamic Impingement Simulation (Unpublished). In: RSNA Annual Meeting (Radiological Society of North America).
Zeng, Guodong; Schmaranzer, Florian; Lerch, Till; Boschung, Adam; Zheng, Guoyan; Burger, Jürgen; Gerber, Kate; Tannast, Moritz; Siebenrock, Klaus-Arno; Kim, Young-Jo; Novais, Eduardo N.; Gerber, Nicolas (1 September 2020). Entropy Guided Unsupervised Domain Adaptation for Cross-Center Hip Cartilage Segmentation from MRI. Lecture notes in computer science, 12261, pp. 447-456. Springer 10.1007/978-3-030-59710-8_44
Gerber, Nicolas; Carrillo, Fabio; Abegg, Daniel; Sutter, Reto; Zheng, Guoyan; Fürnstahl, Philipp (2020). Evaluation of CT-MR image registration methodologies for 3D preoperative planning of forearm surgeries. Journal of orthopaedic research, 38(9), pp. 1920-1930. Wiley 10.1002/jor.24641
Lerch, T.; Zeng, G.; Schmaranzer, F.; Gerber, N.; Siebenrock, K.-A.; Tannast, M. (July 2020). RPS 1010a - Computer-assisted diagnosis of hip dysplasia and femoroacetabular impingement FAI using automatic reconstruction of MRI-based 3D models of the hip joint: a deep learning-based study. In: ECR (European Congress of Radiology) 11 (p. 355). Springer
2019
Zeng, Guodong; Zheng, Guoyan (2019). Holistic decomposition convolution for effective semantic segmentation of medical volume images. Medical image analysis, 57, pp. 149-164. Elsevier 10.1016/j.media.2019.07.003
Novel adversarial semantic structure deep learning for MRI-guided attenuation correction in brain PET/MRI
H Arabi, G Zeng, G Zheng, H Zaidi
European journal of nuclear medicine and molecular imaging 46 (13), 2746-2759
Evaluation of algorithms for Multi-Modality Whole Heart Segmentation: An open-access grand challenge
X Zhuang, L Li, C Payer, D Štern, M Urschler, MP Heinrich, J Oster, ...
Medical image analysis 58, 101537
Hybrid Generative Adversarial Networks for Deep MR to CT Synthesis Using Unpaired Data
G Zeng, G Zheng
International Conference on Medical Image Computing and Computer-Assisted Intervention
3D Tiled Convolution for Effective Segmentation of Volumetric Medical Images
G Zeng, G Zheng
International Conference on Medical Image Computing and Computer-Assisted Intervention
Automatic MRI-based 3D Models of Hip Cartilage Using a 3D U-net-like Fully Convolutional Network for Improved Morphologic and Biochemical Analysis
F Schmaranzer, R Helfenstein, G Zeng, TD Lerch, K Siebenrock, M Tannast, G Zheng
Seminars in Musculoskeletal Radiology 23 (S 02), A021
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge
Hugo J Kuijf, J Matthijs Biesbroek, Jeroen De Bresser, Rutger Heinen, Simon Andermatt, Mariana Bento, Matt Berseth, Mikhail Belyaev, M Jorge Cardoso, Adria Casamitjana, D Louis Collins, Mahsa Dadar, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi, Jesse Knight, Hongwei Li, Xavier Llado, Miguel Luna, Qaiser Mahmood, Richard McKinley, Alireza Mehrtash, Sebastien Ourselin, Bo-Yong Park, Hyunjin Park, Sang Hyun Park, Simon Pezold, Elodie Puybareau, Leticia Rittner, Carole H Sudre, Sergi Valverde, Veronica Vilaplana, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang, Guoyan Zheng, Christopher Chen, Wiesje van der Flier, Frederik Barkhof, Max A Viergever, Geert Jan Biessels
IEEE transactions on medical imaging 38 (11), 2556-2568
Benchmark on automatic six-month-old infant brain segmentation algorithms: the iSeg-2017 challenge
Li Wang, Dong Nie, Guannan Li, Élodie Puybareau, Jose Dolz, Qian Zhang, Fan Wang, Jing Xia, Zhengwang Wu, Jia-Wei Chen, Kim-Han Thung, Toan Duc Bui, Jitae Shin, Guodong Zeng, Guoyan Zheng, Vladimir S Fonov, Andrew Doyle, Yongchao Xu, Pim Moeskops, Josien PW Pluim, Christian Desrosiers, Ismail Ben Ayed, Gerard Sanroma, Oualid M Benkarim, Adrià Casamitjana, Verónica Vilaplana, Weili Lin, Gang Li, Dinggang Shen
IEEE transactions on medical imaging 38 (9), 2219-2230
Novel deep learning-based CT synthesis algorithm for MRI-guided PET attenuation correction in brain PET/MR imaging
H Arabi, G Zeng, G Zheng, H Zaidi
2018 IEEE Nuclear Science Symposium and Medical Imaging Conference Proceedings (NSS/MIC)
Caversaccio, Marco; Wimmer, Wilhelm; Anso, Juan; Mantokoudis, Georgios; Gerber, Nicolas; Rathgeb, Christoph Martin; Schneider, Daniel; Hermann, Jan; Wagner, Franca; Scheidegger, Olivier; Huth, Markus; Anschütz, Lukas Peter; Kompis, Martin; Williamson, Tom; Bell, Brett; Gerber, Kate; Weber, Stefan (2019). Robotic middle ear access for cochlear implantation: first in man. PLoS ONE, 14(8), e0220543. Public Library of Science 10.1101/19000711
Rathgeb, Christoph Martin; Wagner, Franca; Wimmer, Wilhelm; Gerber, Nicolas; Williamson, Tom; Anschütz, Lukas Peter; Weder, Stefan; Stadelmann, Marc; Braga, G; Anso, Juan; Caversaccio, Marco; Weber, Stefan; Gerber, Kate (2019). The accuracy of image-based safety analysis for robotic cochlear implantation. International Journal of Computer Assisted Radiology and Surgery, 14(1), pp. 83-92. Springer-Verlag 10.1007/s11548-018-1834-3
2018
Latent3DU-net: Multi-level Latent Shape Space Constrained 3D U-net for Automatic Segmentation of the Proximal Femur from Radial MRI of the Hip
Guodong Zeng, Qian Wang, Till Lerch, Florian Schmaranzer, Moritz Tannast, Klaus Siebenrock, Guoyan Zheng
International Workshop on Machine Learning in Medical Imaging, 188-196
Lu, Ping; Barazzetti, Livia; Chandran, Vimal; Gavaghan, Kate; Weber, Stefan; Gerber, Nicolas; Reyes, Mauricio (2018). Highly accurate Facial Nerve Segmentation Refinement from CBCT/CT Imaging using a Super Resolution Classification Approach. IEEE transactions on biomedical engineering, 65(1), pp. 178-188. Institute of Electrical and Electronics Engineers IEEE 10.1109/TBME.2017.2697916
Anso, Juan; Wyss, Thomas; Jegge, Yves; Kalvoy, Havard; Bell, Brett; Dür, Cilgia; Calvo, Enric M.; Williamson, Tom; Gerber, Nicolas; Ferrario, Damien; Forterre, Franck; Büchler, Philippe; Stahel, Andreas; Caversaccio, Marco; Weber, Stefan; Gerber, Kate (2018). Electrical Impedance to Assess Facial Nerve Proximity during Robotic Cochlear Implantation. IEEE transactions on biomedical engineering, 66(1), pp. 237-245. Institute of Electrical and Electronics Engineers IEEE 10.1109/TBME.2018.2830303